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Proteomics

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No Screenshot Proteomics Standards Initiative 2.0.0
The Proteomics Standards Initiative (PSI) aims to define community standards for data representation in proteomics to facilitate data comparision, exchange and verification.
Price: USD $0.00;   License: Freeware   File Size: 11399 KB;
Platform: Windows, Mac, Linux

No Screenshot GeneLinker Gold 3.1
Scalable desktop software for visualization, analysis and classification of gene expression and proteomics data to provide biologists accessible data analysis and data mining.
Price: USD $995.00;   License: Shareware (Free to Try)  
Platform: Unknown

No Screenshot ProteinID Finder for Mac OS 1.8.2
A proteomics analyzation software capable of extracting information from the online universal protein resource database UniProt. ProteinID Finder imports your mass spectrometer analyzed protein lists (uniprot accession numbers) into experiments and organizes your proteomics experiments into workspaces. You can share workspaces with your collaborators so everyone is working on the same data. ProteinID Finder can compare multiple experiments and...

Price: USD $0.00;   License: Freeware   File Size: 9728 KB;
Platform: Mac, Linux , 10.4,or,later

ProteinID Finder
No Screenshot JVirGel 2.2.3b
Create your own virtual 2D protein gel. JVirGel is a utility for the simulation and analysis of proteomics data. It determine the theoretical isoelectric points (pI) and the calculated molecular weights (MW) of proteins. It also enables you to visualize these as a virtual two-dimensional (2D) protein map. The user is able to control the presentation of the calculated 2D gel interactively by selecting a pI/MW range and an electrophoretic...

Price: USD $0.00;   License: Freeware   File Size: 34590 KB;
Platform: Windows

Position - Calculation - Identification - Protein - Bioinformatics - Proteomics - JVirGel - Electrophoresis - Virtual Gel - Amino Acids
No Screenshot EigenMS 1.0
EigenMS is a stand-alone (or Matlab) bottom-up proteomics data normalization algorithms. EigenMS utilized SVD to detect significant trends in the data and eliminates those attributable to bias. EigenMS eliminates effects from known and unknown factors.

Price: USD $0.00;   License: Freeware   File Size: 2662 KB;
Platform: Windows, Mac, Linux

No Screenshot JBF 1.0
JBioFramework (JBF) is a set of simulations of three different chemical separations applications (ion exchange chromatography, 1D electrophoresis and 2D electrophoresis) that are frequently used in chemistry, biochemistry and proteomics research.

Price: USD $0.00;   License: Freeware   File Size: 15137 KB;
Platform: Windows, Mac, Linux

No Screenshot Maltcms 1.2.0
Maltcms - Modular Application Toolkit for Chromatography Mass-Spectrometry is a JAVA API for preprocessing, alignment, analysis and visualization of data stored in open file formats used in Proteomics and Metabolomics research.

Price: USD $0.00;   License: Freeware   File Size: 34190 KB;
Platform: Windows, Mac, Linux

No Screenshot Open2Dprot 1.0
Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression data analysis of quantified protein expression across multiple samples from research experiments.

Price: USD $0.00;   License: Freeware   File Size: 7696 KB;
Platform: Windows, Mac, Linux

Screenshot of OpenMS OpenMS 1.9.0
An open source framework for LC-MS based proteomics. OpenMS offers datastructures and algorithms for the processing of mass spectrometry data. The library is written in C++.

Price: USD $0.00;   License: Freeware   File Size: 192647 KB;
Platform: Windows, Mac, Linux , BSD

Screenshot of Pick List Editor Pick List Editor 1.0
The goal of Picklist Editor is to display and modify pick lists before spot picking (in proteomics).

Price: USD $0.00;   License: Freeware   File Size: 50 KB;
Platform: Windows, Mac, Linux

Screenshot of Prequips Prequips 86
A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.

Price: USD $0.00;   License: Freeware   File Size: 17186 KB;
Platform: Windows, Mac, Linux

No Screenshot protein-ms 1.0
Tools for mass spectrometry, especially for protein mass spectrometry and proteomics: Quantification tools, converters for Applied Biosystems (Q Star and Q Trap), calculation of in-silico fragmentation spectra, converter for Mascot result files

Price: USD $0.00;   License: Freeware   File Size: 2483 KB;
Platform: Windows, Mac, Linux

Screenshot of Proteomic Mass Spectrometer Interface Proteomic Mass Spectrometer Interface 1.0
A Mass Spectrometer B and Y ion labeling software for proteomics researchers. Peptide sequences can be read from a library and b and y ions will be calculated and sequence can be manipulated by the user (chem. mod. or amino acid mod.)

Price: USD $0.00;   License: Freeware   File Size: 102 KB;
Platform: Windows, Mac, Linux

No Screenshot twoddb 0.2.0
Software for storing and distributing proteomics data

Price: USD $0.00;   License: Freeware   File Size: 518 KB;
Platform: Windows, Mac, Linux

No Screenshot msInspect 2.3 Build 599
msInspect allows you to process and view mass spectrometry (MS1) data in an mzXML file. You can use msInspect's built-in tools to inspect data, identify peptide features, generate peptide arrays using data from multiple runs, and export data to external applications for further analysis and collaboration. msInspect is an open source application written in Java. msInspect is also a platform for rapid development of proteomics applications, so...

Price: USD $0.00;   License: Freeware  
Platform: Windows 3.x, Windows , All

Analyzer - Mass Spectrometry - MsInspect - Mass Spectrometry Analyzer - Mass Spectrometry Viewer - Peptide Array Generator - Peptide Array
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